The latest documentation on blast covers nothing about warnings yet old blast version of blast has a "-warning" option that enables you to suppress warnings. It's super infuriating that this isn't possible. I need it to not have warnings. How do?
After many many hours testing and searching on Internet, I can't make a database alias using the blastdb_aliastool. It starts with a very **un**documented NCBI …
Hi, I am trying to find similarities between DNA sequences against a chromosomal sequence with the following command line (version 2.6.0+): blastn -subject chr7.fasta -query …
Blast has two incompatible parameters to limit the taxonomical searches: - `-entrez_query` in association with `-remote` - `-window_masker_taxid` (local database only) if `-entrez_query="txid8030[Organism:exp]”` works perfectly …
# Visualizations of ChIP-Seq data using Heatmaps - Updated 3/9/16 (commit: "Included a very simple and preliminary image for the [genomation][1] R package") - Updated …
Have you tried calling
blastfrompythonusingsubprocess.check_output?Another option might be using
blastfrombiopython packageand following the response to Supress/silence warnings from BioPythonHave you tried redirecting stderr to
/dev/null?Why do want to get rid of warnings at all costs?