Hello Experts, I have used BUSCO to get orthologous genes from 50 species. After that, I have sorted the 350 common orthologous genes from 50 …

Hello experts, I want to run 2 programme simultaneously using SLURM (serially) script by which output of 1st programme used as input of second programme. …

Hello experts, I was reading > 'Bierne, Nicolas, and Adam Eyre-Walker. "The problem of counting sites in the estimation of the synonymous and nonsynonymous substitution …

Dear community, I have a sequence alignment (full 16S rDNA) and I'd like to calculate the sequence pairwise distance matrix using a nucleotide substitution model. …

Hi. I am working with the phase 3 1000 genomes vcf data (available here: http://www.internationalgenome.org/data) and need to estimate the number of synonymous and non-synonymous …

Hi all As I want to identify all the zero fold degenerate sites in my genome, I have got annotation file (gff3) and genome sequence, …

I use Dnasp v.5 to calculate nucleotide diversity and Tajima's D for synonymous and non-synonymous sites separately. However, my samples are over 1000, Dnasp v.5 …

Hello, I'd like to estimate the synonymous substitution rate for genes within a single copy region and within an inverted repeat (similar to this article: …

Hi Everyone Could anyone tell me how to calculate pairwise ts/tv ratio given a alignment (the 4-fold degenerate sites extracted from a CDS alignment)? which …

<p>Hello all,</p> <p>Is there a publicly available map of human mutation rate variation across the genome?</p> <p>We know that people have estimated local mutation rates …