Hello, I have 75 oral cancer samples 3 control and 72 treated samples. i did its RNA seq analysis by using Tuxedo pipeline (`Hisat2->Stringtie->Stringtie --merge->ballgown`) …
Hello team, We always study the importance of structure prediction and simulation method. Prediction of protein folding from its amino acid sequence and to refine …
Hi all, I am using Stringtie for transcript assembly and quantification. My experimental design includes 4 different genotypes each under two treatment conditions with sim …
Hi Biostars, To make transcriptome assembly, I mapped the reads (2x75, strand-specific, organism Candida albicans) with tophat2 and did assembly with cufflinks. The command line …
I am working on plant species transcriptome. Its draft genome is known. We want to identify some new transcripts in genome-guided assembly. I need your …
<sarcasm> Please don't bother adding some helpful context. </sarcasm>
I just want to know why to merge transcripts using Stringtie?
Why to merge transcripts?
Have you considered adding some more information to your question?
I am just trying if code works or not sorry for spam :)