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deepti1rao
deepti1rao
Reputation:
60
Joined:
9.2 years ago
Last seen:
6.5 years ago
Latest posts by user
0 votes
1 reply
1.4K views
Assembly size decreased after using SSPACE for scaffolding
sspace assembly size contigs scaffolding
updated by Biostar Biostar • written by deepti1rao • deepti1rao
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0 replies
1 view
Comment: C: Should I replace heterozygous variants to make a consensus
written by deepti1rao • deepti1rao
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0 replies
1 view
Comment: C: Should I replace heterozygous variants to make a consensus
written by deepti1rao • deepti1rao
0 votes
0 replies
1 view
Comment: C: IUAPC codes in consensus sequence ? samtools mpileup / bcftools call / bcftools
written by deepti1rao • deepti1rao
0 votes
1 reply
1 view
Comment: C: Should I replace heterozygous variants to make a consensus
written by deepti1rao • deepti1rao
1 vote
3 replies
7.5K views
Reference based assembly
reference assembly
updated by jean.elbers jean.elbers • written by deepti1rao • deepti1rao
0 votes
6 replies
2.3K views
Should I replace heterozygous variants to make a consensus
variant consensus genome assembly heterozygous
written by deepti1rao • deepti1rao
0 votes
1 reply
1.5K views
vcf v4.2 consequences of missense snps
vcf plant missense snps sift
written by deepti1rao • deepti1rao
0 votes
2 replies
1 view
Comment: C: Need help with R script to edit x-axis of snp density plot
written by deepti1rao • deepti1rao
1 vote
9 replies
7.4K views
Need help with R script to edit x-axis of snp density plot
snps density chromosome r
updated by bernatgel bernatgel • written by deepti1rao • deepti1rao
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0 replies
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Comment: C: Known SNPs for rice for Base recalibration using GATK
written by deepti1rao • deepti1rao
0 votes
1 reply
1 view
Comment: C: What Are You Using For A Reference Assembler?
written by deepti1rao • deepti1rao
0 votes
1 reply
1 view
Comment: C: Is there a way to reformat vcf 4.2 down to 4.1?
written by deepti1rao • deepti1rao
0 votes
4 replies
1.6K views
Finding genes/proteins from variant files
annotation variants
written by deepti1rao • deepti1rao
0 votes
0 replies
1.7K views
Error value for safely scaffolding contigs with SSPACE
sspace error insert size read pairs assembly
written by deepti1rao • deepti1rao
0 votes
1 reply
1.3K views
Using the same read library to scaffold read tracked contigs
scaffolding reads velvet
updated by Tm Tm • written by deepti1rao • deepti1rao
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0 replies
1 view
Comment: C: SSPACE for scaffolding
written by deepti1rao • deepti1rao
0 votes
2 replies
1 view
Comment: A: SSPACE for scaffolding
written by deepti1rao • deepti1rao
1 vote
5 replies
3.5K views
SSPACE for scaffolding
sspace scaffolding contigs insert size bbmap
updated by Ram Ram • written by deepti1rao • deepti1rao
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0 replies
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Comment: C: Continuous alignment of contigs with reference using blast /blat
written by deepti1rao • deepti1rao
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