Reference based assembly with multiple references
I have a hybrid plant, generated from two distant varieties. I need to assemble its genome with NGS data. We have decided to do a reference based assembly, considering that its repeat content of 50% might be a problem for de novo assembly. Can I do it with multiple reference genomes? That is, with both parental genomes as references?
• 2,206 views
•
link
updated
by
Jean-Karim Heriche
•
written
by
deepti1rao •
•
written
by
deepti1rao •
1 answer
• 0 views
•
link
written
by
Jean-Karim Heriche
Log in to answer this question.
More posts like this
-
de novo chromosome level assembly
written by mthm •
-
Reference-guided assembly from short reads
written by liorglic
-
RNAseq Assembly in Diversity Panels
written by nathaniel.schleif •
-
Assembly using two reference genomes
written by deepti1rao •
-
Genome assembly contig ordering
written by mittu1602
-
To know if genome of a plant variety from same species can be used to analyze RNA-seq data of other…
written by rajeshkumar_vinod •
-
Cancer genomics and NGS
written by mst •
-
Assembly pipeline De Novo | Reference
written by elbecerrasoto •
-
Is there any open source assembly softwares that takes in de novo assembly generated contigs and re…
written by ajagannath.patro •
-
Generating Reference Sequence For Genome Wide Variation Study
written by ruru •
