Sequenza gives sequence not found error?
Hi all,
I am running Sequenza on some BAM files, but I keep getting this error:
[E::faidx_adjust_position] The sequence "NC_007605" not found
There really isn't any other message besides this one and I'm not sure what to do. I made a wiggle file from my reference that I used, and I know it is the correct reference because I ran GATK's Mutect and HaplotypeCaller using this reference on the same BAM files. Does anyone know what to do?
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