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Nicola Casiraghi
Nicola Casiraghi
Reputation:
500
Joined:
12.4 years ago
Last seen:
2.4 years ago
Location:
Rovereto, TN, Italy

about me

Latest posts by user
0 votes
1 reply
2.1K views
from phased SNPs to haplotype blocks (or phase sets)
eagle2 statistical phasing haplotype block
updated by Peter Chung Peter Chung • written by Nicola Casiraghi Nicola Casiraghi
1 vote
0 replies
0 views
Comment: C: Problems wth cnvkit scatter for genes
written by Nicola Casiraghi Nicola Casiraghi
0 votes
1 reply
2.8K views
Get the read count per genomic bin for each 10x barcode (10x Genomics Single Cell Gene Expression protocol)
rna-seq 10x genomics cell ranger bam read count
written by Nicola Casiraghi Nicola Casiraghi
1 vote
0 replies
2.4K views
Job: A postdoctoral position is available at CIBIO, University of Trento, Trento, Italy
epigenetics genomics transcriptomics
updated by Ram Ram • written by Nicola Casiraghi Nicola Casiraghi
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0 replies
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Comment: C: Number of SNPs by target sequencing
written by Nicola Casiraghi Nicola Casiraghi
2 votes
1 reply
0 views
Answer: A: Number of SNPs by target sequencing
written by Nicola Casiraghi Nicola Casiraghi
0 votes
0 replies
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Comment: C: How to extract only probes that exist on 2 different platform?
written by Nicola Casiraghi Nicola Casiraghi
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0 replies
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Answer: A: R - Count number of Samples with mutation per gene
written by Nicola Casiraghi Nicola Casiraghi
1 vote
0 replies
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Comment: C: compute count of position coverage with bedtools
written by Nicola Casiraghi Nicola Casiraghi
0 votes
0 replies
1 view
Answer: Answer: Plotting Coverage in R
updated by Ram Ram • written by Nicola Casiraghi Nicola Casiraghi
0 votes
0 replies
1 view
Comment: C: Best method to call SNPs/genotype many bam files from only a defined list of var
written by Nicola Casiraghi Nicola Casiraghi
4 votes
1 reply
0 views
Answer: A: What Are The Most Common Stupid Mistakes In Bioinformatics?
written by Nicola Casiraghi Nicola Casiraghi
0 votes
3 replies
3.5K views
manage huge arrays in R
r ff memory usage
updated by Jean-Karim Heriche Jean-Karim Heriche • written by Nicola Casiraghi Nicola Casiraghi
0 votes
1 reply
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Answer: A: Solid Lines on IGV
written by Nicola Casiraghi Nicola Casiraghi
1 vote
0 replies
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Answer: Answer: Filter annotated VCF snpEFF
updated by Ram Ram • written by Nicola Casiraghi Nicola Casiraghi
0 votes
1 reply
1 view
Comment: C: Python IndexError: list index out of range
updated by Ram Ram • written by Nicola Casiraghi Nicola Casiraghi
0 votes
0 replies
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Answer: Answer: detection of the copy number
updated by Ram Ram • written by Nicola Casiraghi Nicola Casiraghi
1 vote
0 replies
0 views
Comment: C: Read Duplicates
written by Nicola Casiraghi Nicola Casiraghi
1 vote
0 replies
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Answer: Answer: Alignment plot of a small extract (sequence) from a .bam file
updated by Ram Ram • written by Nicola Casiraghi Nicola Casiraghi
2 votes
1 reply
0 views
Answer: Answer: How could I get one chromosome per sequence file since I already have the whole
updated by Ram Ram • written by Nicola Casiraghi Nicola Casiraghi
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