CNV panel making
Hello, We are trying DEcon and panelcn.mops for our NGS panel data, and we need to create a panel of normals for this CNV detection. We try tu download exomes for 1000 genomes, and of course, they don't match with the data of panels we have...
Do you have any idea what we can do? is there a way of download bam files with more coverage?
Thanks!
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What do you mean they don't match? Your setup and ultimate goal(s) are unclear, which make it difficult to provide any advice.
Sorry, I'll try to be more clear. When I say they don't match I mean the coverage the NGS panel has is highier than the exome samples. And the goal is to use them as a control in the CNV tools we are testing, because we don't have enough samples to make a panel of normal with our samples.