Alternative to Split'N'CigarReads in Galaxy
I would like to use GATK best practice method in Galaxy for identifying SNPs in RNA-seq data. After preprocessing my reads, I want to split and trim the reads using SplitNCigarReads tool. Unfortunately, the particular tool is not available in the Galaxy platform. Is there any alternative tool available to SplitNCigarReads?
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srimeenakshi1603 •
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Please add a link to the protocol you're following.
better: don't use galaxy and try to use a command-line.
Duplicate: Alternative tools to SplitNCigarReads