Will pipeline designed for detecting selection in diploid organisms work on my haploid data? · Biostar

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Will pipeline designed for detecting selection in diploid organisms work on my haploid data?

I have found this pipeline designed to detect signatures of positive selection from vcf data, but it claims it is only designed for diploid organisms. If anyone is familiar with this pipeline, do you know if I can just skip the phasing step with my haploid organism and proceed with the analysis? https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4144660/

positive selection vcf pipeline haploid diploid

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written 7.0 years ago by gcooper1245 •

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