how to extract node interactions by Netpathminer
Hi, all. Netpathminer can convert sbml to igraph by SBML2igraph. I would like to extract the node interaction in the pathways, how can I get them? Many thanks.
• 1,257 views
•
link
written
by
liuhaizhou •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
extracting Uniprot IDs for Kegg pathways
written by Assa Yeroslaviz
-
how to combine multiple Cellranger count results from a single library
written by g744695539 •
-
wikipathways to igraph
written by emantzo •
-
Export SIF from Cytoscape error
written by Pluto •
-
Convert a CellDesigner model to a logical model with default logical rules.
written by BioStar7 •
-
How to extract known pathways from protein protein interaction network?
written by jack
-
Extract list of genes from a KEGG sub pathways
written by parvathi.sudha •
-
Multiple Color Values For A Single Node In Igraph
written by raunakms
-
How To Map Kegg Data - Pathways As Nodes, Compounds As Edges.
written by Haji •
-
Extracting Curated Protein-Protein Interactions From Reactome
written by User 8848 •
Brief Reminder On How To Ask A Good Question
Are you interested to get all interactions in the igraph object? or a specific pathway?
Yes, but now I meet a problem, I do not know how to extract the node interaction in the pathways in the SBML or biopax format. Do you have an answer. Many thanks.