More posts like this
-
10x Single cell data analysis with Monocle
written by vk5k •Has anyone tried using a Seurat object or 10x data in Monocle? I was trying in several ways...Disappointed to get error messages like "the object …
-
how to extract node interactions by Netpathminer
written by liuhaizhou •Hi, all. Netpathminer can convert sbml to igraph by SBML2igraph. I would like to extract the node interaction in the pathways, how can I get …
-
How can I convert VCF to HGVS format?
written by Seongmin Choi •Is there any library that I can use to convert VCF format to HGVS format? I'm using a python module called myvariant, but this module …
-
R package (or other software) allowing to save a biological network in GPML format
written by lech.kaczmarczyk •I would like to import a custom made pathway into Pathvisio. It only accepts GPML format. Is there any R package containing a relevant export …
-
export list objects to XLS files
written by Assa YeroslavizHi, I would like to export a list object to an Excel sheet. i was wondering if this can be done with the WriteXLS package. …
-
STRING_db get_clusters error?
written by randalljellisHello, STRING_db is a Bioconductor library used to assess protein interactions. It relies on another library called iGraph that is used to cluster proteins with …
-
Extract Graph Structure from WikiPathways into R igraph?
written by areyoujokingme •I am tasked with the job of porting WikiPathways into an igraph object in R. I'm new to WikiPathways, and know about rWikiPathways R package, …
-
deinterleave fastq file
written by anon •Hi All, I would like to ask that is there an accurate tool/script for deinterleaving fastq files? I managed a 'bam to fastq' conversion according …
-
Convert tagAlign file to bigBed / bigWig
written by senasplage •Hi, I have a bunch of tagAlign files from the Roadmap epigenome, and I would like to convert them into bigBed anr/or bigWig. I never …
-
Handling heterozygosity with VariScan
written by jsgounotHi, I'm currently trying to extract basic information from my data with VariScan (Pi, theta, tajima ...). Currently I export my data in phylip format …