More posts like this
-
ATAC-SEQ FRAGMENT SIZE
written by Irene •Hi! i am doing a quality check of my ATAC-seq data with Picard and i am having this peaks. This is my first time working …
-
Nuclesome visualization
written by jetson •Hello, In reference to visualizing nucleosome positioning through MNase-seq data (Figure 3 and Figure 4 in https://link.springer.com/protocol/10.1007/978-1-0716-0301-7_5) I understand the different fragments being plotted in …
-
Tool: pyGenomeViz - A genome visualization python package for comparative genomics
written by moshi •[pyGenomeViz](https://github.com/moshi4/pyGenomeViz) is a genome visualization python package for comparative genomics implemented based on matplotlib. This package is developed for the purpose of easily and beautifully …
-
How to make a TSS enrichment plot in ATAC-seq analysis?
written by Dan •How to make a TSS enrichment plot in ATAC-seq analysis, which shows the TSS enrichment of nucleosome-free fragments, mono-nucleosome fragments, and di-nucleosome fragments? ![enter image …
-
ATACseq: Extract Mono-nucleosome information from di- and tri-nucleosome data
written by Deep •Hi, My objective is to split di- and tri-nucleosome ATAC-seq data points into mono-nucleosome and then consolidate the total ATAC-seq (mono-, di- and tri-) nucleosome …
-
Tn5 bias in atac-seq
written by srhic •Hello, I recently got back reviews for a paper that contained some atac-seq analysis. The paper followed a standard analysis pipeline where peak calling was …
-
Finding non-regulatory regions genome wide for TF-binding ananlysis
written by mc2548 •I have ATAC-seq reads genome wide and my next step is to look for enriched motifs or TF-binding motifs in these regions. As control I …
-
Job: 11 PhD student positions in the field of regulatory genomics in Berlin (in cooperation with Du…
written by AervalThe new Berlin-wide graduate school **Dissecting and Reengineering the Regulatory Genome** is recruiting 11 PhD students at various institutions through-out Berlin (Germany), in cooperation with …
-
ATAC-seq peak calling with MACS
written by igorI am trying to call peaks in ATAC-seq data. Not surprisingly, MACS is a popular option. According to the [MACS documentation][1]: > 1. To find …
-
Re-creating a heatmap
written by cbioI am attempting to re-create a heatmap found in this [article][1] (Figure 3 B, the MNase-seq one). They rank genes / TSS by length of …

Closing this until you add more details. I am surprised that you would come here and make a question like this. It honestly comes across as somewhat disrespectful to what we do, as if you are saying to us: 'Here is my work... go do it for me'.
zhuobaowen : Please use these instructions. How to add images to a Biostars post
zhuobaowen : I have added the image to your post, please read the instructions genomax linked for next time.
Please be considerate of the people that provide advice on this forum and put some effort into your question.