Phylogenetic distance and differences in microbiome
Hi all,
Is it possible to relate the phylogenetic distance in a phylogenetic tree to the differences that may exist between the microbiome of each of the tree's components? If so, what programs could you use for this? QIIME 2? my idea is to build a heat map or something similar, but I do not know if it is possible to do it with QIIME or a similar program for metagenomics.
• 1,088 views
•
link
written
by
arturo.marin •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Phylogenetic analysis through sliding windows in VCF
written by hollymolly •
-
bash program with two subprograms. How to use getopts in all of them?
written by arturo.marin •
-
Best software to visualize a phylogenetic tree coupled to the presence/absence pattern of clusters …
written by Biok •
-
Can I build a phylgenetic tree using SNPs obtained by differen techniques?
written by rimgubaev
-
If Muscle alignment was used, mucle phylogenetic tree must be used?
written by dainiz.hernandez •
-
Core genome Multilocus sequence analysis and phylogenetic tree heat map
written by nepgorkhey
-
how to get nekwick file for our sequence file
written by arpitha.hebbar.g •
-
Problem with Megan 5 to read biom data from qiime
written by huangxiaomiao3 •
-
Convert Distance Matrix To Newick Format- Biopython
written by asmariyaz23 •
-
How Can I Create A Heat Map With Phylogeny In R?
written by microbeatic
Can you clarify a bit, are you meaning to relate the distances of the hosts to their microbiomes?