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Annovar and wannovar

Hi! I tried comparing the result of wANNOVAR and ANNOVAR using the same file. Only 464 rows matched! Can someone help me to improve my result & bring the same result as wANNOVAR? TIA!

wannovar annovar results
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written by vaish01kv • vaish01kv

Please show all of your processing steps.

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written by Kevin Blighe Kevin Blighe 
perl convert2annovar.pl -format vcf4 SampleName.vcf > converted.input
    perl table_annovar.pl converted.input humandb/ -buildver hg38 -out converted_result -remove -protocol refGene,cytoBand,cosmic70,clinvar_20190305,1000g2015aug_all,1000g2015aug_amr,1000g2015aug_afr,1000g2015aug_eas,1000g2015aug_eur,1000g2015aug_sas -operation gx,r,f,f,f,f,f,f,f,f -nastring . -csvout"
This is the command i used for running annovar.
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written by vaish01kv • vaish01kv

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