AnnotSV, Ranking, empty ranking column

I get an empty "AnnotSV ranking" column in the result file. Can anyone please help me resolve this? TIA

next-gen annotation

• 1,324 views • link

updated 6.9 years ago by ginlucks •

• written 7.2 years ago by vaish01kv •

1 answer

same issue here, did you understand how to fix the problem?

• 0 views • link

written 6.9 years ago by ginlucks •

More posts like this

apt-format-result, where is the --annotation-file?
written 4.4 years ago by barroyo •

Hi everyone! I want to create a PLINK file from the axiom analysed batches using this script: apt-format-result --calls-file <file> --annotation-file <file> --export-plinkt-file My calls-file …
How to solve: fgsea returns empty dataframe
written 6.6 years ago by nattzy94 •

I am trying to run fgsea on a vector, v, containing Pearson's correlation. The vector names contain the corresponding gene IDs. When I run the …
Error with bcftools and vcftools and removing individuals
written 6.7 years ago by seta

Dear all, I'm trying to remove an individuals from a multi-sample vcf file using bcftools and vcftools, but none of them worked well. Also, in …
VCF OTHERINFO Field
written 7.0 years ago by vaish01kv •

Can someone please explain what are Strand bias (SB), Mate bias(MB), F1R2 & F2R1 number detotes in a VCF file? What are potential information drawn …
Annovar result GT field
written 7.1 years ago by vaish01kv •

I annotated my tumor-normal sample using ANNOVAR. The genotype field (GT) was 0/0 for normal and 0/1 for tumor. Can someone please explain, why do …
Annovar and wannovar
written 7.2 years ago by vaish01kv •

Hi! I tried comparing the result of wANNOVAR and ANNOVAR using the same file. Only 464 rows matched! Can someone help me to improve my …
VCF annotation, logic, Annovar, VEP, snpEff
written 7.2 years ago by vaish01kv •

I'm trying to annotate vcf file obtained manualy. Can someone please help me with the algorithm that is behind most of the annotation tool like …
Annotation of Pindel files using AnnotSV
written 7.3 years ago by biologist •

Hello everyone, After running pindel on a tumor-normal paired sample, I used pind2vcf to create one vcf with all the pindel information contained. Then I …
Error in Transcript to gene level estimation using "Genesum" package
written 10.4 years ago by Pam •

I am using Genesum package for estimating gene abundnace from transcript abundance. As input, I give sailfish generated expression file "Quant.sf" and gene annotation "GTF" …
Done..preparing the outlier table...please wait.... when using lositan
written 10.6 years ago by kang602839647 •

When I using lositan to find the outlier loci, the lositan stay in "Done..preparing the outlier table...please wait....", it can't get result, did someone have …