apt-format-result, where is the --annotation-file?
Hi everyone!
I want to create a PLINK file from the axiom analysed batches using this script:
apt-format-result --calls-file <file> --annotation-file <file> --export-plinkt-file
My calls-file was generated in step 7 of the APT software. However, I can't find any annotation-file (or any *.db file). Is this an output from one of the APT steps? or is this a file provided by APT?
Hope you can help me resolve this.
Kind regards, B
• 856 views
•
link
updated
by
Kevin Blighe
•
written
by
barroyo •
•
written
by
barroyo •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
I need to convert Axiom output to PLINK format I did not find annotation.db
written by AlmuhayyaA •
-
How to create AffymetrixSuite file for using it in apt-format-result tool?
written by tvibhaps •
-
PennCNV step1.1 error
written by jaredgichohi •
-
How to convert Affymetrix Cytoscan HD to PLINK
written by Jorrit •
-
How to replace/fill "Ns" in fasta with reference file having same coordinates
written by Adnan •
-
Conversion of SNP array data to PLINK format
written by gitanjali.tandon •
-
GWAS data QC in PLINK
written by AR •
-
Batch effect in Axiom Human Origins Array
written by Simo •
-
Select one allele at heterozygote position
written by stolarek.ir
-
BLAST database error: no alias or index file found for nucleotide database [swissprot] in search pa…
written by arfaj a •
Cross-posted: https://support.bioconductor.org/p/9143017/