SNPEff - Exonic Variants
Hi folks
Is there a simple way to identify all exonic variants in SNPEff results in the same way that wAnnovar results can be filtered on the Func.RefGene column for "exonic"?
Is my only option to identify and aggregate the different variant types in the ANN= part of the INFO field?
I can't help but think there must be a more straightforward method?
TIA
• 2,343 views
•
link
updated
by
George •
•
written
by
hoollyywood •
•
written
by
hoollyywood •
1 answer
what do you get with the options -no-intergenic -no-intron ?
• 0 views
•
link
written
by
Jeremy Leipzig
Log in to answer this question.
More posts like this
-
Variant calling in WES vs WGS
written by fifty_fifty •
-
Filtering data from snpEFF annotated file
written by Peerzada •
-
Intron variant identifier
written by Sabeen •
-
Structural annotations of vcf. files
written by Lukáš •
-
snpEff gives warning: INFO_REALIGN_3_PRIME, what does it mean?
written by boxate1618 •
-
SnpSift set intersection with EFF annotations
written by Richard
-
SnPEff ANN[*].FEATURE and ANN[*].FEATUREID annotation
written by yasminsoareslima •
-
Interpretation of snpeff results
written by misbahabas •
-
What kind of filtering can be applied to reduce my exonic variants?
written by bioinforesearchquestions
-
Selecting Variants based on annotations in a VCF file
written by petersam •
