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How do I find out the adaptor sequences for SRA data?
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14 months ago
MAPK ♦ 1.4k
United States

I would like to analyze some small RNA data from NCBI (eg. https://www.ncbi.nlm.nih.gov/sra/SRR5593145), but I am not sure where I can find the adaptor sequences for trimming. Can anyone please suggest.

adaptor sra • 139 views
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Thank you! Not sure if I can use BBMAP if it's single ends though.

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TrueSeq small RNA kit sequences (based on the SRA link) should be in their sequence document.

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