Protein protein network analysis
During protein protein network interaction analysis, we have in-degree and out-degree and we also have EdgeCount. Please in calculating the hub nodes, which of the values is used? In degree or out degree? Or EdgeCount which is sum of in-degree and out-degree
Thanks
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Liftedkris •
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It will depend on the hub score metric that is being used (there are different ones). Please confirm the program that you are using for your network analysis.
Also, please follow up on your previous threads: R analysis for read counts using edgeR
If you do not follow up consistently, then people will eventually stop responding to you.
Sorry for the late response, I’m using cytoscape
Cool. Which exact plugin / function are you using? You can simply do a search in a search engine to see how it calculates the hub scores.
Ok thanks. I was able to fix it
Thanks 🙏