Hi all,
Just to clarify, we can use MCODE or Cytohubba to identify the hub nodes based on different algorithms— correct me if I am wrong. Is there a means to identify Hub nodes on the String app? Also, what are the recommended algorithms on Cytohubba to identify the Hub nodes? I have been using degree and betweenness.
Sincere thanks.
1 answer
If String app does mean String database here, Then as per my experience you can't find a hub node there. You need to export it to Cytoscape for using different apps to it.
I moved Sangram's comment to an answer. Yes, please export your STRING network to Cytoscape and then use NetworkAnalyzer plugin. Also, take a look here: A: node degree in cytoscape to find hub proteins
Kevin
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