Cytoscape for co-occurence network analysis
1
0
Entering edit mode
2.9 years ago
Bioinfonext ▴ 460

I am able to import the network into Cytoscape. Now I am trying to find the hub microbes in the network based on Betweenness Centrality and Closeness Centrality.

Just some more queries;
1) How should I import edge attributes (correlation & P-value) as local or shared?
2) How can I do filtering based on cor and p-value (edge attributes) and how to color positive and negative edges?
3) How can I identify the hub microbes in a network (based on network topology calculation)?

Many thanks,

Microbiome 16S analysis Cytoscape Network • 958 views
ADD COMMENT

Login before adding your answer.

Traffic: 1810 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6