More posts like this
-
Clustering of RNA-seq data
written by Eduardo •
-
Tools for generating realistic rna-seq reads from reference transcriptome
written by shinyjj •
-
Validating splice site using protein sequence
written by praasu •
-
How to train annotations tools
written by Ric
-
Retrieving sequences and Blast them
written by Ric
-
exon skipping and intron retention analyse
written by Ric
-
Trinotate sqlite and gene_to_trans_map
written by Ric
-
Genome annotation using COG
written by Paul
-
Annotation pipelines in 2018
written by Ric
-
Finding ortholog transcript sequences after de novo transcriptome assembly
written by vahapel
OrthoMCL is an orthologue clustering tool for defining core genomes/pangenomes etc. In theory you could use it with CDSs extracted from assembled transcripts, but I don't really see why you would do this (unless I'm missing something).
What are you trying to achieve?
You should use cd-hit then.