Homozygous and heterozygous variants in Tassel5 output, what are they?
Hello! Could you please help to find information regarding "genotype calling" in Tassel5? Is it true that homozygous reference is (1/1), heterozygous is (0/1), and homozygous non-reference or alternate is (0/0)?
In other words, Tassel5 takes the major allele as the reference and the minor as the alternative, right?
Thank you in advance!
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