I am trying to do batch correction on the junction read counts, and I am trying to extract the categorised junction supporting reads for each …

Hi, I am looking at a rare splicing event, and would like to keep only reads in a specific interval that have an alignment at …

I've posted a screen shot of the IGV alignment of paired end reads and picked out an individual read, pulling up the stats for that …

I'm trying to import my reference genome into IGV so that I can view an alignment but IGV doesn't seem to like my reference fasta. …

Hi everyone, I'm quite new to RNAseq paired end analysis so apologies if this comes across as a basic question. I have been visualising paired …

Hello, This is the IGV view from reads illumina mapped to a reference bacterial genome. The window shows a specific bacterial gene. Each sample is …

I've been looking at some of my NGS data in IGV, and I've found some reads that aren't given a block colour, but instead are …

Apologies for my inexperience with bowtie. I have a series of map files all containing reads with very consistent mapping quality: ~35-40. ![enter image description …

<p>Hello,</p> <p>I have an old dataset from 2010 of PE illumina 54bp reads with a lot of PCR duplicates. These pairs of duplicates are very …

<p>Hello,</p> <p>I was wondering if anyone has used BRIG (Blast Ring Image Generator) previously? </p> <p>I am trying to make a "mapping coverage" circular genome …