In MAF files, does c_position is equivalent to cDNA_positions?
Hello I'm working with TCGA maf for BRCA, (version 37 of the genome). In the GDC documentation about mafs https://docs.gdc.cancer.gov/Data/File_Formats/MAF_Format/ they mention a field called cDNA_positions, all I can find in my maf is c_position. Is it the same? Thanks in advance
EDIT: This is a sample of the maf (in xlsx format) http://s000.tinyupload.com/?file_id=73401428386308170995
• 1,457 views
•
link
written
by
mariamcurbelo2061 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
TCGA metadata intersection
written by Darked89
-
What is the difference between information in maf files and vcf?
written by Денис •
-
TCGA germline and somatic snvs
written by SUMIT •
-
TCGA MAF (mutation annotation format) to EIGENSOFT's smartpca via PLINK (or: how to get SNP centiMo…
written by cindy.perscheid
-
Difference between allele1 vs. allele2 in TCGA MAF files?
written by jiaqiwu •
-
How to generate a mutated DNA sequence?
written by mariamcurbelo2061 •
-
What does TCGA uses a a reference for making snp annotation?
written by mariamcurbelo2061 •
-
Aggregate multiple VCFs into a single MAF or generate a multi-sample MAF from a multi-sample VCF
written by Luca Beltrame
-
Where to get somatic mutations from WGS data?!
written by dankoc •
-
TCGA MAF files after migration to GDC
written by nilus1432 •
Can you paste a few (~10) lines of your MAF file? See this post on pasting tabular content.
The mafs were obtained from here https://www.synapse.org/#!Synapse:syn1729383.2 (I'm currently working with BRCA) I'll add a sample to the question