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Extract reads used for contigs assembly

Hi all,

Basically I want to realize a plot with all reads from each contigs resulting from my asssembly with the last version of Velvet. To do that I am looking for a script or anything else to parse an AFG file or any other solution to get a file with each contigs of my assembly and all the reads used for the assembly of those contigs.

Best,

assembly sequencing rna-seq
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updated by cpad0112 cpad0112 • written by Clet • Clet

Hi, i am challeging with same problem. Can you solve it and how?

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written by hs • hs

Please move it to a new post with more details and please rephrase the question. Did you try the solution furnished using quast below?

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written by cpad0112 cpad0112

1 answer

how about using quast software to get a analysis report on the assembly http://quast.sourceforge.net/quast

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written by neranjan • neranjan

Thanks neranjan, I will try with

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written by Clet • Clet

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