obtaining fastg format after hybrid assembly

Question

[mariachiaracascarano]

Hi everybody,

I find the assembly graph visualisation a very useful tool to practically visualise my assembled metagenomes.

I performed an initial assembly with canu (minion reads) and after made a polishing with illumina short reads with Pilon. Unfortunately the output of Pilon does not provide a fastg format, therefore I cannot visualise how polishing has modified my long reads assembly...

Does anybody have a tool or something to suggest? I am sure something useful is out there.

Thanks
Chiara