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Quality control after genotype imputation

Can anyone kindly explain me the possible ways of quality control of imputed data? Any reference papers or site describing post imputation quality control would be highly appreciated. I am quite new in this field. I have used BEAGLE for imputation. Thank you in advance.

imputation
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written by jzannatun • jzannatun

Different programs such as BEAGLE and IMPUTE2 have different guidelines for post imputation quality control, which I am not an expert on. Those who might be able to help you would benefit from knowing what program you used for imputation to guide responses to you.

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written by jean.elbers jean.elbers

Dear jean.elbers I have used BEAGLE for imputation

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written by jzannatun • jzannatun

Thank you. I am reading the article.

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written by jzannatun • jzannatun

1 answer

So, someone else chimed in on BEAGLE post imputation quality control, see A: Beagle imputation results quality control

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written by jean.elbers jean.elbers

Thanks a lot! I hope I can finish my work soon.

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written by jzannatun • jzannatun

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