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Expression data visualization

Hi,

I would like to know if there are any tools for the visualization of the expression based data in R and Python that includes all the plotting types or some of them as mentioned below since I am currently using individual graphics tools for plotting.

> PCA 
> Hierarchical clustering
> K-means clustering
> Scatter plot
> Box plot
> Correlation plot
> Volcano plot
> Matrix plot
> Profile plot

Thank you, Toufiq

rna-seq qrt-pcr plots r python
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updated by WouterDeCoster WouterDeCoster • written by mohammedtoufiq91 mohammedtoufiq91

Have you searched google for some tutorials?

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written by Benn Benn

Yes, really, Toufiq, you should learn how to use a search engine. We cannot put ourselves at the behest of people who make minimal effort to search for answers prior to posting here.

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written by Kevin Blighe Kevin Blighe

R use a package strategy that allows you to import packages you want to use and not all existing packages.

For example if you want a PCA you have this

#install
install.packages(FactoMineR)
#load
library(FactoMineR)

Then you can use the PCA() function in your R script

If you want a volcano plot, search a package that trace it, install it, load it and use it

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written by Bastien Hervé Bastien Hervé

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