Extract A Sequence From Ucsc
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How to get the sequence of a genomic region from UCSC?
Hello, I want to receive the sequence of a specific region in uscs, for example chr 8 region 17888999-34888999. How can I receive the sequece of the desired region via uscs or other database? Thank you!!!
1 answer
Two ways:
- Put that in the browser as
chr8:17888999-34888999and have that region on display. Click the "Get DNA" link at the top. You will have various quick options to just take down the sequence. - Use the Table Browser to get it. Steps: Go to Table Browser. Choose species/assembly. Choose Genes/Gene Predictions Tracks, UCSC genes. Knowngene table. Click the radio button for "position" and enter
chr8:17888999-34888999in the text box. Move down to output area. Choose "sequence" from list. Click "get output" button. Next page will offer genomic/rna/protein. Choose genomic. Next page has more options, make choices. Click "get sequence" button. You'll get the range.
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