SNP annotation for de novo transcriptome data
I have list of SNP for de novo transcriptome data (plant) . I would like to know the tools to annotate the these SNPs without using the reference genome.
I will appreciate if somebody suggests appropriate tool for this purpose..
Many thanks in advance
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poecile.pal •
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nasreenbano91 •
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nasreenbano91 •
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Dear nasreenbano91,
Could you please tell me if you have managed to find a suitable tool for this purpose? I faced the same problem. Thank you very much in advance!