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poecile.pal
poecile.pal
Reputation:
50
Joined:
6.6 years ago
Last seen:
2.7 years ago
Location:
Russia
Latest posts by user
0 votes
6 replies
2.5K views
How long should the AAA... sequence be at the end of read, so that fastqc and multiqc consider it as poly- tail
multiqc fastqc polya
updated by GenoMax GenoMax • written by poecile.pal • poecile.pal
0 votes
0 replies
1.5K views
Nucleotide substitution model and neighbor-joining tree
phylogeny substitution mega neighbor-joining modeltest
written by poecile.pal • poecile.pal
0 votes
0 replies
829 views
TrN (df = k+5) and TrNe (df = k+2) - which of these Tamura-Nei model variants is used in MEGAx?
tamura-nei phylogeny phangorn modeltest mega
written by poecile.pal • poecile.pal
0 votes
0 replies
0 views
Comment: Comment: wrong quality plots in fastqc output
written by poecile.pal • poecile.pal
0 votes
1 reply
0 views
Comment: Comment: wrong quality plots in fastqc output
written by poecile.pal • poecile.pal
0 votes
3 replies
1.5K views
wrong quality plots in fastqc output
samtools fastqc fastq wgsim
updated by Ram Ram • written by poecile.pal • poecile.pal
0 votes
0 replies
0 views
Comment: Comment: reference for freebayes or samtools mpileup after extracting chromosome from ali
written by poecile.pal • poecile.pal
0 votes
0 replies
0 views
Answer: Answer: Why 0/0 genotype refers to SNP and ALT != REF (in vcf file after freebayes)
written by poecile.pal • poecile.pal
0 votes
1 reply
1.3K views
Why 0/0 genotype refers to SNP and ALT != REF (in vcf file after freebayes)
genotype vcf freebayes snp vcflib
written by poecile.pal • poecile.pal
1 vote
0 replies
0 views
Answer: Answer: reference for freebayes or samtools mpileup after extracting chromosome from ali
written by poecile.pal • poecile.pal
0 votes
3 replies
2.2K views
reference for freebayes or samtools mpileup after extracting chromosome from alignment
samtools snp alignment freebayes
updated by Ram Ram • written by poecile.pal • poecile.pal
1 vote
0 replies
0 views
Comment: Comment: How not to merge R1 and R2 pair-end files in multiqc report
written by poecile.pal • poecile.pal
0 votes
0 replies
0 views
Comment: Comment: How not to merge R1 and R2 pair-end files in multiqc report
written by poecile.pal • poecile.pal
1 vote
0 replies
0 views
Answer: Answer: bwa: reads aligned concordantly exactly 1 time
written by poecile.pal • poecile.pal
0 votes
4 replies
2.9K views
How not to merge R1 and R2 pair-end files in multiqc report
multiqc fastqc
written by poecile.pal • poecile.pal
0 votes
1 reply
1.3K views
bwa: reads aligned concordantly exactly 1 time
bowtie2 samtools hisat2 alignment bwa
written by poecile.pal • poecile.pal
0 votes
0 replies
0 views
Comment: Comment: hisat2-map error: "gzip: stdout: Broken pipe, (ERR): hisat2-align died with sign
written by poecile.pal • poecile.pal
0 votes
2 replies
1.9K views
hisat2-map error: "gzip: stdout: Broken pipe, (ERR): hisat2-align died with signal 9 (KILL)"
fastq gzip hisat2
updated by Ram Ram • written by poecile.pal • poecile.pal
0 votes
0 replies
641 views
calculate meandepths for CDSs after mapping transcriptome reads to the genome
gtf samtools alignment sam
updated by Ram Ram • written by poecile.pal • poecile.pal
0 votes
0 replies
0 views
Comment: Comment: gtf file without exons
written by poecile.pal • poecile.pal
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