I am trying to run PSI-BLAST from the command line, but keep getting the following error: BLAST query/options error: Unsupported format for PSSM
I am getting the PSSM by downloading it from this page: https://www.ncbi.nlm.nih.gov/Class/Structure/pssm/pssm_viewer.cgi?mode=Position&cd=cd00209.
I already created a protein sequence database with makeblastdb, and I think the problem is in the PSSM. I just cant find enough information on this.
Any help would be appreciated. Thanks in advance.