how to generate genetic maps from VCF snps data
Hi Everyone,
Could someone guide me on how to generate genetic map from snps VCF file in order to use it for imputation. I have filtered my snps VCF file and I need genetic map for the imputation. I got to know that one can use PLINK. I need to know what I need to extract from my data prior to using PLINK. Thanks
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Kevin Blighe
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mab658
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mab658
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The genetic maps are available from here:
I also have them saved on my own online storage.
Kevin
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Which imputation program?
I am using beagle 5.0 program for imputation.
It looks like you are just asking question after question about imputation using Beagle. What work have you done so far? Have you performed an extensive search on how to create a genetic map?