bedgraph file format in IGV: good for observing CNV ?
Hello,
I found here that I can use begraph format to observe CNV in IGV. Suposedly, I will be able to see overrepresentations and deletions, so I converted my (aligned reads) bam file to bedgraph and opened it on IGV.
My question is if what I am seeing is actually an overrepresentation, see image attached.
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how is it different from your previous question ? How can I tell if there is CNV for specific gene in IGV?
Because I have found bedgraph format, and i am adding an image to see if i am on the correct path