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Looking for degenerate primer sequences in a multi-fasta file

Hello there,

Is there a certain software / script that you can recommend for looking for degenerate sequences in multi-fasta file?

I know that primer-blast is one of them, but am just exploring other options.

Thank You.

pcr
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updated by Cupton Cupton • written by Ming • Ming

1 answer

our tools: Sequence searcher https://4virology.net/virology-ca-tools/sequence-searcher/

Base-By-Base https://4virology.net/virology-ca-tools/base-by-base/

could work, depends how many fasta seqs you have

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written by Cupton Cupton

Thank you! :) Much appreciated!

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written by Ming • Ming

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