Difference between proper paired reads and mapped and paired reads
Hi,
I am using samtools stats to get some information about my genome. Can anybody explain to me the difference between reads mapped and paired and reads properly paired?
Thanks.
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Pierre Lindenbaum
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bio_student •
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reads mapped and paired
the input of the mapping was a set of two fastq files R1.fq and R2.fq from a paired end experiment
reads properly paired?
reads R1 and R2 from the same segment are mapped on the same chromosome, at a good expected distance with the correct directions. see https://www.slideshare.net/lindenb/ngsformats from slide 30.
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Pierre Lindenbaum
sorry, I deleted everything.
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