See my answer in this other post.
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Jean-Karim Heriche
Recommendation for statistics book
Hi, Could anyone suggest a good statistics book for non statistician to understand clustering, PCA plots and tsne plots.
Thank you, Hothri
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hothriananya
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Jean-Karim Heriche
Hi, anybody has feedback on this one? https://compgenomr.github.io/book/
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Hmm may not covers all of your interested areas but the book below is very useful to general statistical concepts in bioinformatics. Worth taking a look (where most of it is shown in R):
https://www.amazon.com/Data-Analysis-Life-Sciences-R-ebook-dp-B01N6Y3IVP/dp/B01N6Y3IVP/ref=mt_kindle?_encoding=UTF8&me=&qid=
@Kevin's tutorial: PCA in a RNA seq analysis
If I have to explain technicalities of PCA to a biologist, this is where I would start.