scRNA-seq: how to visualize SNN-Cliq clustering result
0
0
Entering edit mode
6.7 years ago
pacman ▴ 70

I am comparing various clustering methods for scRNA-seq data. Does it make sense to show SNN-Cliq clustering result on a 2D tSNE plot? I am asking because one of the methods I am testing is kmean clustering of the PCA (which then use tSNE for visualization). A direct comparison between those two method on the same plot would be quite nice.

scRNAseq single-cell SNN Snn-cliq tsne • 2.2k views
ADD COMMENT

Login before adding your answer.

Traffic: 2629 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6