Gene 3D Data download
How do i download the 3D structures of genes from ncbi given the gene name ex: MAPK3
gene
• 1,333 views
•
link
written
by
kingkenshin1997 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Download customized list of human protein sequence
written by Angelina_G •Hello, I have a list of ~1000 human gene names (currently in csv format) and I would like to download their protein amino acid sequence …
-
How to get the gene expression matrix from GEO while getGEO returns 0 features?
written by bioyas •Hi, I would like to download the gene expression data with GEO accession number "GSE104075" from GEO repository. here is my code: ```r gset <- …
-
Fasta Sequence from Gene name
written by kingkenshin1997 •I have around 10000 gene names(MAPK3 , MAPK6 etc) .How can i get the fasta sequence for each gene name from ncbi all together?
-
Spherical coordinates of 3D structure of gene
written by kingkenshin1997 •Does anyone have any code to get the spherical coordinates of the 3D structure of gene(3D structure is in .pdb format)?
-
Equirectangular projection of 3D structure of gene
written by kingkenshin1997 •Does anyone have any code to basically get the equirectangular projection of the 3 D structure of gene(3D structures are in .pdb file format)?
-
3D to voxel
written by kingkenshin1997 •How do i generate a voxel matrix from a 3D structure of a gene present in .pdb format?
-
Gene Name from PDB id
written by kingkenshin1997 •How do i retrieve the gene names from a list of PDB id's ? say for example: MAPK3 from 2ZOQ I would like to do …
-
Human PDB ids
written by kingkenshin1997 •How do i download all the PDB id's of genes of homosapiens/humans ? I would like to download them all at once
-
Download all NCBI gene names, synonyms, and gene ID for an organism
written by Patrick •I would like to download all NCBI genes, synonyms and gene ID #s for mouse, and then human. Ive tried downloading lists of gene names, …
-
Tool: Biogyan: Search Mine Annotate
written by reachtoskumar •BioGyan (http://www.biogyan.com/) is a comprehensive search tool specially designed for biologists, enabling search, annotation and ranking of scientific literature from public databases using proprietary text-mining …
Google "protein data bank" :)
I wanted to integrate it to a python script. Is there any api to download the 3D data all together?
PDB does offer a REST API.