Hi, in my experience that gets you about half of the the annotations, however the way the web front-end of Uniprot calculates the localization seems more complex. They also calculate a localization for entries without the comment section, solely based on GO terms. So if looking for the 'final verdict' from Uniprot, there is no real solution other than screen-scraping, getting the Uniprot code (would be awesome if this was open-source, not sure why they won't share the code), or parsing GO terms to test if they are derived from the cellular component ontology.
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Michael Dondrup
I have had the same problem recently, I will link you to my question and close this one, ok?
Extracting Sub-cellular location from Uniprot into tabular format
Hello nkhan.mscs15seecs!
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