I would like to use the WGCNA package but the tutorials are gone (http://labs.genetics.ucla.edu/horvath/CoexpressionNetwork/Rpackages/WGCNA/) and I cannot find any free tutorial that explains how to execute their main analysis pipelines.
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The new location is here:
It seems to have been moved within the last few days (time of writing: August 22, 2018).
Kevin
Hi, Thank you! But it seems that it need at least 15 samples, if I only have 7 timepoint, 2 replicate for wach time point, if I can still use WGCNA...
With 2 replicates per time-point, your set-up is not great. Why only 2? It will be very difficult to publish that in any reputable journal.
Hi, thanks for reply, we didn't aim to do WGCNA at first, but just think about if it could be done or as a reference for results:)
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I found this: https://hms-dbmi.github.io/scw/WGCNA.html but it is not comprehensive enough.
I think this is the new link to the old tutorials, could someone confirm? https://horvath.genetics.ucla.edu/html/CoexpressionNetwork/Book/
Hi, Thank you! But it seems that it need at least 15 samples, if I only have 7 timepoint, 2 replicate for wach time point, if I can still use WGCNA....