WGCNA plot clustering genes with modules under, all colors mixed up
I am doing WGCNA. I have made the plot clustering dendrogram of genes, with dissimilarity based on topological overlap. I get a plot like in figure 3 of https://labs.genetics.ucla.edu/horvath/CoexpressionNetwork/Rpackages/WGCNA/Tutorials/FemaleLiver-02-networkConstr-man.pdf But in the other tutorial http://pklab.med.harvard.edu/scw2014/WGCNA.html the modules colours are together, giving clear modules. From my reading I would expect the modules would be together like that.
Would anyone know since they are apart, is the still "good" and why are they apart when they are supposed to clustering together?
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