maftools - no chromosomal coordinates
I have a file of genes and alterations but there are no chromosomal cooridinates associated with those alterations. Can I used maftools on this file. Here is the first line of the file that I have
Tumor_sample_Barcode gene alteration type mut_type
200_B NF1 D724N SNV missense
Thanks in advance
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sumithrasank75
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Please use the formatting bar (especially the
codeoption) to present your post better. I've done it for you this time.Please read the manuals for maftools, find out what is the input, and adapt your input, then see if you still have problems.