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sumithrasank75
sumithrasank75
Reputation:
140
Joined:
11.3 years ago
Last seen:
7.5 years ago
Location:
United States
Latest posts by user
0 votes
2 replies
1.4K views
maftools - no chromosomal coordinates
r snp bioconductor
updated by Biostar Biostar • written by sumithrasank75 sumithrasank75
1 vote
1 reply
3.5K views
converting log-odds ratio to p-value in HOMER
chip-seq
written by sumithrasank75 sumithrasank75
0 votes
2 replies
1.8K views
Identify TF binding sites genomewide
sequence next-gen genome
updated by Alex Reynolds Alex Reynolds • written by sumithrasank75 sumithrasank75
0 votes
2 replies
3.0K views
getting a list of alignment with a particular bam tag from a bam file
alignment
updated by Pierre Lindenbaum Pierre Lindenbaum • written by sumithrasank75 sumithrasank75
0 votes
3 replies
4.2K views
parsing fastq files in python
next-gen
updated by lakhujanivijay lakhujanivijay • written by sumithrasank75 sumithrasank75
0 votes
0 replies
1.4K views
Using monocle on dge file
next-gen rna-seq
written by sumithrasank75 sumithrasank75
1 vote
5 replies
8.2K views
heatmap using DESeq2
rna-seq
updated by cpad0112 cpad0112 • written by sumithrasank75 sumithrasank75
0 votes
1 reply
0 views
Comment: C: genes close to random genomic locations
written by sumithrasank75 sumithrasank75
0 votes
4 replies
2.0K views
genes close to random genomic locations
gene
written by sumithrasank75 sumithrasank75
0 votes
2 replies
2.6K views
string search in fastq file
sequencing
updated by Alex Reynolds Alex Reynolds • written by sumithrasank75 sumithrasank75
0 votes
0 replies
1 view
Comment: C: searching for sequences in a fastq file
written by sumithrasank75 sumithrasank75
0 votes
1 reply
1.9K views
iterating through 2 fastq files and changing read_id in one of them
next-gen
updated by WouterDeCoster WouterDeCoster • written by sumithrasank75 sumithrasank75
0 votes
1 reply
1 view
Comment: C: searching for sequences in a fastq file
written by sumithrasank75 sumithrasank75
0 votes
6 replies
6.5K views
searching for sequences in a fastq file
next-gen
updated by WouterDeCoster WouterDeCoster • written by sumithrasank75 sumithrasank75
0 votes
5 replies
8.7K views
extracting reads from fastq file based on read_id
next-gen
updated by Charles Plessy Charles Plessy • written by sumithrasank75 sumithrasank75
0 votes
1 reply
7.4K views
understanding bamtobed output
alignment
updated by Biostar Biostar • written by sumithrasank75 sumithrasank75
0 votes
5 replies
2.6K views
getting reads counts at RefSeq genes
alignment gene
updated by Amitm Amitm • written by sumithrasank75 sumithrasank75
0 votes
1 reply
1 view
Comment: C: choosing reads from a fastq file based on another fastq file
written by sumithrasank75 sumithrasank75
0 votes
7 replies
3.2K views
choosing reads from a fastq file based on another fastq file
next-gen
updated by Pierre Lindenbaum Pierre Lindenbaum • written by sumithrasank75 sumithrasank75
0 votes
1 reply
6.3K views
parsing a fastq file using biopython
next-gen
updated by iraun iraun • written by sumithrasank75 sumithrasank75
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