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Question: Mapsplice 2 error
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When running this command it shows error like this, I have all file in One folder. Please help me to resolve this problem

mapsplice.py -o outfuse --fusion --min-fusion-distance 200 -c bowtie2index.fa -x bowtie2index -1 SRR087416.fastq_filtered

[Mon Aug  6 12:07:02 2018] Beginning Mapsplice run (MapSplice v2.2.0)
[Mon Aug  6 12:07:02 2018] Bin directory: /home/prashant/anaconda2/bin/ 
[Mon Aug  6 12:07:02 2018] Preparing output location outfuse/
[Mon Aug  6 12:07:02 2018] Checking files or directory: SRR087416.fastq_filtered
[Mon Aug  6 12:07:02 2018] Checking files or directory: bowtie2index.fa/
Error: Could not find files or directory bowtie2index.fa/

Thank you

ADD COMMENTlink 18 months ago amitunited0532 • 10 • updated 18 months ago EagleEye 6.4k
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Instead of -c bowtie2index.fa you need to provide the directory path where the 'bowtie2index.fa' is stored. If it is in current directory, you can just specify '-c ./'.

MapSplice user guide.

ADD COMMENTlink 18 months ago EagleEye 6.4k
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I kept all files in one folder and also checked command which suggested. Again showed same error.

ADD REPLYlink 18 months ago
amitunited0532
• 10
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Please report your recent command used and also the error log.

ADD REPLYlink 18 months ago
EagleEye
6.4k

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