I want to understand what meffil.snp.concordance does ![enter image description here][1] As it mentioned above (image), if I run meffil.snp.concordance, it will return two vectors. …

Hi, How can I compare the genomes of two different species and identify the number of SNPs between them? For example, to know how many …

Hi All I want to compare the counts of concordant and discordant genotypes out of a total SNPs between paired samples. I tried using *PLINK* …

Hi All, What is the best way to compare genotypes between two different vcf files. Thanks Tarek

Hi All, I have two final illumina reports from bead chip experiment (300,000 SNPs). Ideally genotypes of these two samples should be identical. How can …

Just want to know if I can get Variant Calling directly from two or more reads fastq files without reference genome? I need to compare …

I simply want to compare genetic divergence between two populations using two different marker types, microsatellites and snps. What would be a suggested approach? I …

I have three population to compare their allele frequency. Based on the previous AFLP fingerprint, we know B is derived from A. A and B …

Thanks to the help from experts from this forum, I have already compressed and indexed the vcf files to provide inputs for using vcf-compare. I …

<p>Hi all,</p> <p>I am doing a process of genotypes imputation, however, still have questions:</p> <p>if I understand correctlt, the imputation is used to fill those …