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comparison of divergence with different markers

I simply want to compare genetic divergence between two populations using two different marker types, microsatellites and snps. What would be a suggested approach? I realize there are probably several ways to go about this, but any general idea would be great. Thanks.

snps microsatellites
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written by outlier95 • outlier95

Fst is a good measure of differentiation between populations

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written by microfuge microfuge

As @microfuge mentioned, Fst between populations is a good measure. Also, try structure program, it gives an idea about gene flow between populations and also calculates genetic distance between populations.

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written by second_exon second_exon

1 answer

  • Fst (as above) and other F statistics, including their allelic analogs
  • uncorrected genetic distances
  • corrected genetic distances
  • IM/IMa/IMa2
  • Migrate
  • LAMARCK

among many others.

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written by Brice Sarver Brice Sarver

Thanks! Very helpful information.

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written by outlier95 • outlier95

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