visualization of chromatin interaction networks
Dear all,
please would you advise if there is any bioinformatics tool (in R/Bioc, or in any other environment eg Cytoscape) that could help with the visualization of CHROMATIN INTERACTION NETWORKS as a GRAPH (where NODES="chromosome loci", and EDGES = "interactions"). Thanks a lot !
-- bogdan
1 answer
- Circos is best to visualize chromosome and its interaction (Intra- and Inter-chromosomal).
- If you are talking about HiC data try this, HiCplotter
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